Ok, not sure why I didn't notice this sooner but... My new axles have a different variety of dust shield which is not allowing a good seat on the diff output flange. So, trying to decided if I should:
1: Torque the bolts down and see if the thin aluminum dust shield will "crush" into place.
2: Buy 2 new axle boot kits (Since the dust shield doesn't appear to be sold individually)
Original dust shield axle:

New axle dust shield:

as you can see the only difference is the crown ledge. Diameter is identical.