From my understanding the TB and a M30 AFM are both worthless mods. There really isn't much of a restriction on the intake side of things. If you were to compare opening surface area on the TB I am pretty sure its equal to the M20 TBody, just 2 throttle vales instead of one.
The M30 AFM on the M20 is a mild improvement, but nothing radical.
The AFM itself really isn't that bad as far as being a restriction, its biggest issue is the delay in throttle response.
I know there is at least one turbo M42 that is running MS. I know from my M20 experaince the throttle response on Megasquirt is much better. For the price if you wanted to remove the AFM just megasquirt it, will be cheaper and work better then any other MAF hack.
One thing I am working on is making a pulse manifold like Metric Mechanics sells for 1K. I have a spare intake and got the price from a guy to do a prototype, about 300. I might just do some of hte work myself for the 1st one. MM claims 15% increase in low and midrange torque