Thanks for the speedy reply, Dave. Ok, throughout the process, I do not ever remember touching anything having to do with ignition harness, coils, or plugs. If I did, it was because it was in the way of removing the timing case. The tensioner is definitely a newer one, I pulled it from the box, installed it compressed and then it opened up behind the guide. (Pushing it back in did a number on my fingers.)
It seems as if the chain is jumping in the case- as if it is being caught on something then let free. Timing was what I thought as well. However, I'm pretty sure I had it at TDC and then adjusted the cams after that but it could be possible that something moved.
Just to clarify, I'm getting backfiring from the inake. We saw flames shooting out from the underside of the intake boot. Which btw I thought was supposed to be sealed? And the engine does not start at all.
I should have waited like you said some time to come back to it last night or even slept on it. However, I may have went into bull mode and just tried to charge through. Ended up a little frustrated :p