How much boost? In general, I would say no, you can't (or at least shouldn't) run a 93 octane MarkD chip with a turbo. For low-boost rigs (<8psi), I have read that the stock chip is more or less fine (with some larger injectors proportional to the amount of boost being run), using a higher pressure fuel pressure regulator. The big issue is ignition timing. The stock chip has very conservative ignition advances, and the big gains come from advancing it a bunch in performance chips. That is probably a no-no under boost, given the stock CR of 10:1.
What are your turbo plans exactly?