Well, I was told by the guy I am getting my e36 m42 motor from that he was told they would not fit, however, he has both trans and they appear to be the same pattern (maybe minus one hole).
The engine blocks are supposed to be identical.
If you look at both part lists, they have both been through changes, odds are, the e36 went through changes to fit other engines while maintaining backwards compatibility, which would explain the extra holes.