Hi there guys, thanks for your replies.
Well, the truth is I didn´t think of the so low position of the piston with a shorter conecting rod, but hey, Metric mechanic is using a 134,5mm rod with the 88mm crank, intended for forced induction.
Also keep in mind that the S50/S52 piston is a little shorter(in height) than the M42(see gizmo´s pics on BimmerFMs, so it wouldn´t sit so low in BDC. the difference would be 8,5mm lower in the bore.
Once I get all the parts, I will play around with the pistons, rods, cranks, etc... measure everything, and see what´s the best solution.
Cheers!