So an update (finally).
I have done a bit with my car since then. A bunch of new suspension parts, control arms, springs, shocks etc. Anyway, more importantly, I have replaced both rear wheel bearings, and put in a 4.10 LSD from diffsonline.com. One of my rear calipers locked up as well, so my rear calipers, pads and rotors were replaced.
The whine is still there. It really sounds like it is coming from the back, but I wonder if my driveshaft is making the noise. My ebrake seems to work properly, so I do not know if that could be it.
Before replacing the diff, I lifted the rear wheels up and spun them up to about 60MPH. My mechanic friend said that the noise was coming from the diff. Since I have a new (used) diff and the noise is still there, I am looking towards something with the driveshaft.
I think my next step is to check out the Guibo/flex disk and center bearing.
I wonder, could it simply be my tires making noise? Sounds more mechanical/metal than a rubber on pavement sound though.