Hey guys, I just did this over summer, and wrote the following up for a friend who is about to tackle "the mess under the intake". I wish I took pictures to help document, but sadly I did not.
I got rid of the throttle body heating plates, so if you're looking to do the same, this is what you need to do:
11531714738 - coolant pipe from block
11531709157 - o-ring for pipe
13541743261 - throttle body gasket
11611717761 - upper/lower intake gasket
11611734684 - lower intake/block gasket
11531709052 - lower rad hose
64211386691 - coolant hose
13411721971 - vacuum hose from intake to ICV
13411721972 - vacuum hose from ICV to intake boot (lengthened with plastic/brass barbed fittings)
11151717858 - valve cover to throttle body (lengthend with plastic/brass barbed fittings)
Reuse a bunch of the plastic couplers, reducers, etc from the mess, you'll have a bunch extra from a lot of the stuff you'll be throwing away.
Brass barb fittings (
http://www.plumbingsupply.com/barb.html)...I forget exactly what you need but with the intake off you'll be able to figure it out, you're gonna want a bunch of 1/2" splicers, a few reducers, and a 90 degree reducer, that you make out of a barb x fips and a 90 degree elbow barb x mips. You want to use the reduceres and splicers to change between different size hoses, and also to space out like 5-6" of hose so that it doesn't collapse under vacuum.
Obviously you're going to need some hose clamps, coolant (heater) hose, and vacuum hose for the brake booster if you mess yours up like I did. I got the vacuum hose from rockauto (Gates part number 27230).
I did not replace the 2-3" of fuel lines between the hard lines because they looked alright. But if you want to replace them, then you need to add some 5/16" fuel injection hose to your parts list.
Like I said before it's fairly obvious with the intake off what you need depending on what you want to do.
It is definitely way easier to use the OEM lines for the ICV to intake and valve cover to throttle body and extending them with the barbed fittings rather than using regular heater hose or vacuum hose because they have the correct bends. Trust me I tried using regular hose and it didn't work very well.
Good luck!!!