It appears you either go full M44 or Full M42, with a few hybrid exceptions. The M44 head will not work with the M42 Fuel injection since the cam sensors are different and in a different timing position, plus there is only one coolant temp sensor and its also different--all according to Metric Mechanics.
You could run the M44 crank/rods/pistons in the M42 block, with an overbore obviously. It may require removing the internal timing wheel, not sure but someone here or on R3v did that.
I will be running a full M44 setup including its Motronic, close-ratio trans and a taller axle to match.
A few other MM tidbits as well:
E30 intake manifolds flow better in the top end than the variable E36 stuff. M44 valve train is good to around 8K rpm with the right cams and springs.
That's all I know, and most of it is learned from MM since I called them for advice.
What I will learn in the following months I will share as well in a build thread