There's a vacuum leak that gets people sometimes, and it is very hard to figure out. The upper intake manifold may not be bolted to the lower one perfectly, and this is due to the front steel bracket that holds it. When installing the upper intake manifold onto the lower one, always do it with both steel brackets loosened up. Once all of the 11mm nuts are fully secured, then you should tighten the steel brackets down. If you don't, there is a chance that the upper manifold will be cocked at a funny angle and have a big gap between the two manifolds! That got me once.
Also, the vacuum lines are prone to cracking, especially the nasty mess of ones under the throttle body.