I had the same problem, the lower timing cover has a new gasket ontop of it. This gasket has a 90 degree bend in each corner, the tab was to big for the gasket to lay flat, thus making the upper timing chain cover to be raised. I cut down the tab to fit properly and use gasket sealer as directed in the manual. I also seen someone use a screw driver to press the upper timing chain cover downwards, by using the cam sprockets as leverage. Then tighten the bolts as needed.