Could be that the upper tube plugged & rusted off. Hopefully not...get yourself about 6' of coaxial cable and snake it in there to check if it's clear.
I've also seen a lot of leaks on the trunk seal itself, right under the hinges. There's a weld there that tends to rust - water pools in the corners of the trunk pocket, seeps along the rusty seam & under the trunk seal, then down the spring mount and into the trunk.
You'd likely have to pull the rear of the headliner and the c-pillar off to really get a good look. It's been too long since I pulled one apart, but I believe the rear & c-pillar fabric is retained by the rear window rubber seal. It's a heck of a job.