Well, I figured out what the interior noise was. It is the clutch master cylinder. The linkage is tight, but it seems that some rubber bit inside is worn & the input shaft thing can move around a bit & make noise. I have a rebuild kit for it (had it for a year) that I need to get around to.
I also noticed that I get a lot of rattle from the timing chain between 3000RPM & 3500RPM. it only does it when the motor is warmed up. The tensioner piston has ~20k miles on it, so I wouldn't think that it is from that. I recently fixed a stripped bolt on the driver's side guide rail that eliminated a bad bad noise, and this must have been masked by that. I swear this rattling is a new occurrence ever since I rebuilt the timing case, but i cannot be sure. The worn idler sprocket might have been masking this all along. What might it be? I double checked all of the bolts when I reassembled. Could it be that the M42 timing chain is just plain noisy?