Thanks for the link, i will look that over.
You are correct, I had those coils wrong, that's what I get for not cross referencing the chart I found first on Revlimited.

I will have to check the layout when I get home on that one. While that is an issue, it doesn't clear up the continuity question.
The harness is not plugged into the ECU when checking the continuity, I have one lead from the meter plugged into the ECU Harness and the other lead checking for continuity on pin 1 in the coil connector to identify them. Then when I plug that coil connector into a coil, leaving the meter lead in the same spot on the ECU harness, I have continuity on pins 2 & 3 on the three other coil connectors (unless I am plugged into #2coil, then there is no continuity on pin 2 or 3 on the other coils).